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Plasmid midiprep

Plasmid midiprep

The plasmid midiprep kit provides an easy and reliable method to purify plasmid DNA from 50-100 mL bacterial cultures in less than 60 minutes. The DNA is ready for downstream applications such as transfection, RFLP, DNA amplification, and automated sequencing.

Kit I: 100-200 µg of high copy plasmid DNA can be isolated from 50 mL culture.
Kit II: 200-500 µg of high copy plasmid DNA can be isolated from 100 mL culture.
Choice of 2 types of columns for centrifugation or vacuum manifold.
Endofree Midiprep: Endotoxin < 0.2 EU / µg DNA.

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Plasmid midi kit I
Cat#: PD1411-01
Size: 10
50~100 mL bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 52.00
Add to Cart
EndoFree plasmid ezFilter midi kit
Cat#: PD1415-01
Size: 10
Purification from bacterial suspension up to?200~400 microgram endofree plasmid DNA Learn More
$ 90.00
Add to Cart
EndoFree plasmid midi kit
Cat#: PD1414-02
Size: 25
Purification from bacterial suspension up to?200~400 microgram endofree plasmid DNA Learn More
$ 175.00
Add to Cart
EndoFree plasmid midi kit
Cat#: PD1414-01
Size: 10
Purification from bacterial suspension up to?200~400 microgram endofree plasmid DNA Learn More
$ 79.00
Add to Cart
Plasmid ezFilter midi kit
Cat#: PD1413-02
Size: 25
50~100 mL?bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 175.00
Add to Cart
Plasmid ezFilter midi kit
Cat#: PD1413-01
Size: 10
50~100 mL?bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 79.00
Add to Cart
Plasmid midi kit II
Cat#: PD1412-02
Size: 25
50~100 mL?bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 175.00
Add to Cart
Plasmid midi kit II
Cat#: PD1412-01
Size: 10
50~100 mL?bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 79.00
Add to Cart
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Plasmid midiprep protocol

Key to the kit is the proprietary DNA binding systems that allow the high efficient binding of DNA to our ezBindTM matrix while proteins and other contaminates are removed under certain optimal conditions. Nucleic acids are easily eluted with sterile water or TE buffer. Unlike all other rivals, Our patented plasmid purification kit has no guanidine salt in the buffer, the purified DNA is guanidine/ion exchange resin residues free which enable the high performance of downstream applications such as transfection, restriction mapping, library screening, sequencing, as well as gene therapy and genetic vaccinations.

Important Notes

The yield of plasmid DNA depends on the origin of the replication and the size of the plasmid. The protocols are optimized for high copy number plasmid purification. For low copy number plasmids, both the culture volume and the buffer volume need to be scaled up 3 to 5 times. Please contact our customer service for further information and reference the table below for the commonly used plasmids.

Plasmid

Origin

High copy

Low copy

pACYC

P15A

10-12

pSC101

pSC101

5

pSuperCos

pMB1

10-20

pBR322

pMB1

15-20

pUC

Muted pMB1

500-700

pGEMR

Muted pMB1

300-400

pBluescriptR

ColE1

300-500

Storage and Stability

Buffer A1 should be stored at 4℃ once RNase A is added. All other materials can be stored at room temperature. The Guaranteed shelf life is 18 months from the date of purchase.

Before Starting

Prepare all components and get all necessary materials ready by examining this instruction booklet and become familiar with each step.

Important:

R RNase A: Spin down RNase A vial briefly. Add the RNase A solution to Buffer A1 and mix well before use.

R Buffer B1 precipitates below room temperature, it is critical to warm up the buffer at 37℃ to dissolve the precipitates before use.

R Keep the cap tightly closed for Buffer B1 after use.

R Make sure the availability of centrifuge and vacuum manifold, especially, after mixing the lysate with ethanol, the sample needs to be processed immediately either by centrifugation or vacuum.

R Carry out all centrifugations at room temperature.

Materials supplied by users:

R 70% ethanol and 100% ethanol.

R High speed centrifuge, 50 mL high speed centrifuge tubes, 50 mL tubes, and vacuum manifold.

Kit Contents

Catalog #

PD1412-01 PD1414-01

PD1412-02 PD1414-02

Preps

10

25

EzBindTM Columns

10

25

Filter syringe

10 (PD1414-01)

25 (PD1414-02)

Buffer A1

50 mL

120 mL

Buffer B1

50 mL

120 mL

Buffer C1

60 mL

140 mL

RNase A

300 μL

750 μL

Elution Buffer

15 mL

30 mL

EZgeneTM Plasmid Midiprep Spin Protocol

1. Inoculate 50-80 mL LB containing appropriate antibiotic with 0.5 mL overnight culture of E. coli containing the desired plasmid. Grow at 37℃ for 12-16 hours with vigorous shaking. (Do not use over 80 mL culture).

2. Harvest the bacterial by centrifugation at 5,000 x g for 10 minutes at room temperature. Pour off the supernatant and blot the inverted tube on paper towels to remove residual medium.

3. Add 4 mL Buffer A1 (Add RNase A into Buffer A1 before use) and completely resuspend bacterial pellet by vortexing or pipetting (Complete resuspension is critical for optimal yields).

4. Add 4 mL Buffer B1, mix gently but thoroughly by inverting 5 times and incubate for 2-5 minutes to obtain a slightly clear lysate. Do not incubate longer than 5 minutes. Over-incubating causes genomic DNA contamination and plasmid damage.

5. Add 5 mL Buffer C1, mix immediately by inverting 5 times and vortex for 10 seconds. NOTE: It is critical to mix the solution well, if the mixture still appears conglobated, brownish or viscous; more mix is required to completely neutralize the solution.

6. Transfer the lysate to a high speed centrifuge tube and centrifuge at 13,000 rpm (14,000-18,000 x g) for 20 minutes at room temperature! NOTE: If the rotor is cold, incubate the lysate at room temperature for 10 minutes and then perform centrifugation as described.

7. Carefully transfer the clear supernatant into a 50 mL tube (avoid the floating precipitates). Add 5 mL 100% ethanol. Mix immediately by inverting 5 times.

NOTE: The mixture of ethanol/lysate needs to be centrifuged through the DNA column immediately.

8. Immediately apply the lysate/ethonal mix into a DNA column with the

collection tube. Centrifuge at 5,000 x g for 5 minutes at room temperature. Remove the column from the tube and discard the flowthrough. Reinsert the column to the collection tube.

If the rotor is cold, incubate the lysate at room temperature for 10 minutes and then perform centrifugation.

9. Add 10 mL 70% ethanol into the column, centrifuge at 5,000 x g for 5 minutes. Remove the column from the tube and discard the flow through. Reinsert the column into the collection tube. Repeat once.

10. Add 5 mL 100% ethanol into the column, centrifuge at 5,000 x g for 5 minute at room temperature. Remove the column from the tube and discard the flow through. Reinsert the column into the collection tube.

11. Centrifuge the column at 5,000 x g for 5 minutes.

12. Add 0.5 - 1 mL sterile water or TE buffer to the center of the column and incubate for 1 minute at room temperature. Elute the DNA by centrifugation at 5,000 x g for 5 minutes..

NOTE: The DNA is ready for downstream application. For maximum yield and higher concentration, elute the column with another 500 μL of elution buffer and precipitate the DNA with 0.1 volume of 3 M KAc, pH 5.2 and 0.7 volume of isopropanol. Centrifuge at top speed for 10 minutes, remove the supernatant. Add 800 μL 70% ethanol, centrifuge for 5 minutes, carefully decant. Air-dry the sample and resuspend the DNA in sterile water or TE buffer.

EZgeneTM Plasmid ezFilter Midiprep Vacuum Protocol

1. Inoculate 50-80 mL LB containing appropriate antibiotic with 0.5 mL overnight culture of E. coli containing the desired plasmid. Grow at 37℃ for 12-16 hours with vigorous shaking. (Do not use over 80 mL culture).

2. Harvest the bacterial by centrifugation at 5,000 x g for 10 minutes at room temperature. Pour off the supernatant and blot the inverted tube on paper towels to remove residual medium.

3. Add 4 mL Buffer A1 (Add RNase A into Buffer A1 before use) and completely resuspend bacterial pellet by vortexing or pipetting (Complete resuspension is critical for optimal yields).

4. Add 4 mL buffer B1, mix gently but thoroughly by inverting 5 times and incubate for 2-5 minutes to obtain a slightly clear lysate. Do not incubate longer than 5 minutes. Over-incubating causes genomic DNA contamination and plasmid damage.

5. Add 5 mL Buffer C1, mix immediately by inverting 5 times and vortex for 10 seconds. NOTE: It is critical to mix the solution well, if the mixture still appears conglobated, brownish or viscous; more mix is required to completely neutralize the solution.

6. Pour the lysate into the barrel of the filter syringe. And tape the syringe to a clean 15 mL tube (not supplied) and set in a 15 mL tube rack. Allow the cell lysate to sit for 10 minutes. The white precipitates should float to the top.

7. Hold the filter syringe barrel over the 15 mL tube and gently insert the plunger to expel the cleared lysate to the tube, stop when feel resistance, some of the lysate may remain in the flocculent precipitate, do not force the residual lysate through the filter.

NOTE: Be careful not to overfill the column, the maximum load is 20 mL, load the rest after the lysate has been passed through the column.

8. Carefully transfer the clear supernatant into a 50 mL tube (avoid the floating precipitates). Add 5 mL 100% ethanol. Mix immediately by inverting 5 times.

NOTE: The mixture of ethanol/lysate needs to be vacuumed through the DNA column immediately.

9. From step 8, immediately transfer lysate/ethanol mixture to the column attached to the manifold, apply vacuum to allow sample pass through the column. Transfer the remaining lysate/ethanol mixture to the column till all the sample has been passed through the column

 
10. Wash the column with 10 mL 70% ethanol, repeat once.

 
11. Wash the column with 5 mL 100% ethanol and leave the vacuum on for 10 minutes (this is critical to remove ethanol residue).

NOTE: Increase the time to 20 minutes if over 10 samples are processed at the same time. The columns also can be centrifuged at 5,000 x g for 5 minutes in a 50 mL conical tube to remove residual ethanol.

12. Detach the column from the manifold, wipe off any trace ethanol and put the column to a clean 15 mL conical tube.

13. Add 0.5-1 mL sterile water or TE buffer to the column and let the column sit for 2 minutes. Centrifuge at 5,000 x g for 5 minutes to elute the DNA.

NOTE: Use less elution buffer if high concentration is desired. Note: The DNA is ready for downstream application. For maximum yield and higher concentration, elute the column with another 500 μL of elution buffer and precipitate the DNA with 0.1 volume of 3 M KAc, pH 5.2 and 0.7 volume of isopropanol. Centrifuge at top speed for 10 minutes, remove the supernatant. Add 800 μL 70% ethanol, centrifuge for 5 minutes, carefully decant. Air-dry the sample and resuspend the DNA in sterile water or TE buffer.

Trouble Shooting Guide

Problem

Possible Reason

Suggested Improvement

Low Yield

Poor Cell lysis.

· Resuspend pellet thoroughly by votexing and pipetting prior adding buffer B1.

· Make fresh buffer B1 if the cap had not been closed tightly. (Buffer B1: 0.2N NaOH and 1%SDS).

Low Yield

Bacterial culture overgrown or not fresh.

Grow bacterial 12-16 hours. Spin down cultures and store the pellet at -20℃. if the culture is not purified the same day. Do not store culture at 4℃over night.

Low Yield

Low copy-number plasmid.

Increase culture volume (up to 100mL for Midipreps). Increase the volume of buffer A1, B1, C1 and ethanol proportionally with the ratio of 1:1:1.2:1.2.

No DNA

Plasmid lost in Host E.coli

Prepare fresh culture.

Genomic DNA contamination

Over-time incubation after adding buffer B1.

Do not vortex or mix aggressively after adding buffer B1. Do not incubate more than 5 minutes after adding solution B1.

RNA contamination

RNase A not added to solution A1.

Add RNase A to buffer A1.

Plasmid DNA floats out of wells while running in agarose gel, DNA doesn’t freeze or smell of ethanol

Ethanol traces not completely removed from column.

Make sure that no ethanol residual remaining in the silicon membrane before elute the plasmid DNA. Re-centrifuge or vacuum again if necessary.