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Plasmid midiprep
The plasmid midiprep kit provides an easy and reliable method to purify plasmid DNA from 50-100 mL bacterial cultures in less than 60 minutes. The DNA is ready for downstream applications such as transfection, RFLP, DNA amplification, and automated sequencing.
Kit I: 100-200 µg of high copy plasmid DNA can be isolated from 50 mL culture.
Kit II: 200-500 µg of high copy plasmid DNA can be isolated from 100 mL culture.
Choice of 2 types of columns for centrifugation or vacuum manifold.
Endofree Midiprep: Endotoxin < 0.2 EU / µg DNA.
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Plasmid midi kit I
Cat#: PD1411-01 Size: 10
50~100 mL bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 52.00
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EndoFree plasmid ezFilter midi kit
Cat#: PD1415-01 Size: 10
Purification from bacterial suspension up to?200~400 microgram endofree plasmid DNA Learn More
$ 90.00
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EndoFree plasmid midi kit
Cat#: PD1414-02 Size: 25
Purification from bacterial suspension up to?200~400 microgram endofree plasmid DNA Learn More
$ 175.00
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EndoFree plasmid midi kit
Cat#: PD1414-01 Size: 10
Purification from bacterial suspension up to?200~400 microgram endofree plasmid DNA Learn More
$ 79.00
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Plasmid ezFilter midi kit
Cat#: PD1413-02 Size: 25
50~100 mL?bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 175.00
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Plasmid ezFilter midi kit
Cat#: PD1413-01 Size: 10
50~100 mL?bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 79.00
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Plasmid midi kit II
Cat#: PD1412-02 Size: 25
50~100 mL?bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 175.00
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Plasmid midi kit II
Cat#: PD1412-01 Size: 10
50~100 mL?bacterial suspension yields 200 microgram (I) or 400 microgram (II) high purity plasmid DNA Learn More
$ 79.00
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Plasmid midiprep protocol
Key to the kit is the proprietary DNA binding systems that allow the high efficient binding of DNA to our ezBindTM matrix while proteins and other contaminates are removed under certain optimal conditions. Nucleic acids are easily eluted with sterile water or TE buffer. Unlike all other rivals, Our patented plasmid purification kit has no guanidine salt in the buffer, the purified DNA is guanidine/ion exchange resin residues free which enable the high performance of downstream applications such as transfection, restriction mapping, library screening, sequencing, as well as gene therapy and genetic vaccinations.
Important Notes
The yield of plasmid DNA depends on the origin of the replication and the size of the plasmid. The protocols are optimized for high copy number plasmid purification. For low copy number plasmids, both the culture volume and the buffer volume need to be scaled up 3 to 5 times. Please contact our customer service for further information and reference the table below for the commonly used plasmids.
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Plasmid |
Origin |
High copy |
Low copy |
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pACYC |
P15A |
10-12 |
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pSC101 |
pSC101 |
5 |
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pSuperCos |
pMB1 |
10-20 |
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pBR322 |
pMB1 |
15-20 |
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pUC |
Muted pMB1 |
500-700 |
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pGEMR |
Muted pMB1 |
300-400 |
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pBluescriptR |
ColE1 |
300-500 |
Storage and Stability
Buffer A1 should be stored at 4℃ once RNase A is added. All other materials can be stored at room temperature. The Guaranteed shelf life is 18 months from the date of purchase.
Before Starting
Prepare all components and get all necessary materials ready by examining this instruction booklet and become familiar with each step.
Important:
- R RNase A: Spin down RNase A vial briefly. Add the RNase A solution to Buffer A1 and mix well before use.
- R Buffer B1 precipitates below room temperature, it is critical to warm up the buffer at 37℃ to dissolve the precipitates before use.
- R Keep the cap tightly closed for Buffer B1 after use.
- R Make sure the availability of centrifuge and vacuum manifold, especially, after mixing the lysate with ethanol, the sample needs to be processed immediately either by centrifugation or vacuum.
- R Carry out all centrifugations at room temperature.
Materials supplied by users:
- R 70% ethanol and 100% ethanol.
- R High speed centrifuge, 50 mL high speed centrifuge tubes, 50 mL tubes, and vacuum manifold.
Kit Contents
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Catalog # |
PD1412-01 PD1414-01 |
PD1412-02 PD1414-02 |
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Preps |
10 |
25 |
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EzBindTM Columns |
10 |
25 |
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Filter syringe |
10 (PD1414-01) |
25 (PD1414-02) |
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Buffer A1 |
50 mL |
120 mL |
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Buffer B1 |
50 mL |
120 mL |
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Buffer C1 |
60 mL |
140 mL |
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RNase A |
300 μL |
750 μL |
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Elution Buffer |
15 mL |
30 mL |
EZgeneTM Plasmid Midiprep Spin Protocol
1. Inoculate 50-80 mL LB containing appropriate antibiotic with 0.5 mL overnight culture of E. coli containing the desired plasmid. Grow at 37℃ for 12-16 hours with vigorous shaking. (Do not use over 80 mL culture).
2. Harvest the bacterial by centrifugation at 5,000 x g for 10 minutes at room temperature. Pour off the supernatant and blot the inverted tube on paper towels to remove residual medium.
3. Add 4 mL Buffer A1 (Add RNase A into Buffer A1 before use) and completely resuspend bacterial pellet by vortexing or pipetting (Complete resuspension is critical for optimal yields).
4. Add 4 mL Buffer B1, mix gently but thoroughly by inverting 5 times and incubate for 2-5 minutes to obtain a slightly clear lysate. Do not incubate longer than 5 minutes. Over-incubating causes genomic DNA contamination and plasmid damage.
5. Add 5 mL Buffer C1, mix immediately by inverting 5 times and vortex for 10 seconds. NOTE: It is critical to mix the solution well, if the mixture still appears conglobated, brownish or viscous; more mix is required to completely neutralize the solution.
6. Transfer the lysate to a high speed centrifuge tube and centrifuge at 13,000 rpm (14,000-18,000 x g) for 20 minutes at room temperature! NOTE: If the rotor is cold, incubate the lysate at room temperature for 10 minutes and then perform centrifugation as described.
- 7. Carefully transfer the clear supernatant into a 50 mL tube (avoid the floating precipitates). Add 5 mL 100% ethanol. Mix immediately by inverting 5 times.
NOTE: The mixture of ethanol/lysate needs to be centrifuged through the DNA column immediately.
- 8. Immediately apply the lysate/ethonal mix into a DNA column with the
- collection tube. Centrifuge at 5,000 x g for 5 minutes at room temperature. Remove the column from the tube and discard the flowthrough. Reinsert the column to the collection tube.
If the rotor is cold, incubate the lysate at room temperature for 10 minutes and then perform centrifugation.
- 9. Add 10 mL 70% ethanol into the column, centrifuge at 5,000 x g for 5 minutes. Remove the column from the tube and discard the flow through. Reinsert the column into the collection tube. Repeat once.
- 10. Add 5 mL 100% ethanol into the column, centrifuge at 5,000 x g for 5 minute at room temperature. Remove the column from the tube and discard the flow through. Reinsert the column into the collection tube.
- 11. Centrifuge the column at 5,000 x g for 5 minutes.
- 12. Add 0.5 - 1 mL sterile water or TE buffer to the center of the column and incubate for 1 minute at room temperature. Elute the DNA by centrifugation at 5,000 x g for 5 minutes..
NOTE: The DNA is ready for downstream application. For maximum yield and higher concentration, elute the column with another 500 μL of elution buffer and precipitate the DNA with 0.1 volume of 3 M KAc, pH 5.2 and 0.7 volume of isopropanol. Centrifuge at top speed for 10 minutes, remove the supernatant. Add 800 μL 70% ethanol, centrifuge for 5 minutes, carefully decant. Air-dry the sample and resuspend the DNA in sterile water or TE buffer.
EZgeneTM Plasmid ezFilter Midiprep Vacuum Protocol
1. Inoculate 50-80 mL LB containing appropriate antibiotic with 0.5 mL overnight culture of E. coli containing the desired plasmid. Grow at 37℃ for 12-16 hours with vigorous shaking. (Do not use over 80 mL culture).
2. Harvest the bacterial by centrifugation at 5,000 x g for 10 minutes at room temperature. Pour off the supernatant and blot the inverted tube on paper towels to remove residual medium.
3. Add 4 mL Buffer A1 (Add RNase A into Buffer A1 before use) and completely resuspend bacterial pellet by vortexing or pipetting (Complete resuspension is critical for optimal yields).
4. Add 4 mL buffer B1, mix gently but thoroughly by inverting 5 times and incubate for 2-5 minutes to obtain a slightly clear lysate. Do not incubate longer than 5 minutes. Over-incubating causes genomic DNA contamination and plasmid damage.
5. Add 5 mL Buffer C1, mix immediately by inverting 5 times and vortex for 10 seconds. NOTE: It is critical to mix the solution well, if the mixture still appears conglobated, brownish or viscous; more mix is required to completely neutralize the solution.
6. Pour the lysate into the barrel of the filter syringe. And tape the syringe to a clean 15 mL tube (not supplied) and set in a 15 mL tube rack. Allow the cell lysate to sit for 10 minutes. The white precipitates should float to the top.
- 7. Hold the filter syringe barrel over the 15 mL tube and gently insert the plunger to expel the cleared lysate to the tube, stop when feel resistance, some of the lysate may remain in the flocculent precipitate, do not force the residual lysate through the filter.
NOTE: Be careful not to overfill the column, the maximum load is 20 mL, load the rest after the lysate has been passed through the column.
- 8. Carefully transfer the clear supernatant into a 50 mL tube (avoid the floating precipitates). Add 5 mL 100% ethanol. Mix immediately by inverting 5 times.
NOTE: The mixture of ethanol/lysate needs to be vacuumed through the DNA column immediately.
NOTE: Increase the time to 20 minutes if over 10 samples are processed at the same time. The columns also can be centrifuged at 5,000 x g for 5 minutes in a 50 mL conical tube to remove residual ethanol.
- 13. Add 0.5-1 mL sterile water or TE buffer to the column and let the column sit for 2 minutes. Centrifuge at 5,000 x g for 5 minutes to elute the DNA.
NOTE: Use less elution buffer if high concentration is desired. Note: The DNA is ready for downstream application. For maximum yield and higher concentration, elute the column with another 500 μL of elution buffer and precipitate the DNA with 0.1 volume of 3 M KAc, pH 5.2 and 0.7 volume of isopropanol. Centrifuge at top speed for 10 minutes, remove the supernatant. Add 800 μL 70% ethanol, centrifuge for 5 minutes, carefully decant. Air-dry the sample and resuspend the DNA in sterile water or TE buffer.
Trouble Shooting Guide
|
Problem |
Possible Reason |
Suggested Improvement |
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Low Yield |
Poor Cell lysis. |
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|
Low Yield |
Bacterial culture overgrown or not fresh. |
Grow bacterial 12-16 hours. Spin down cultures and store the pellet at -20℃. if the culture is not purified the same day. Do not store culture at 4℃over night. |
|
Low Yield |
Low copy-number plasmid. |
Increase culture volume (up to 100mL for Midipreps). Increase the volume of buffer A1, B1, C1 and ethanol proportionally with the ratio of 1:1:1.2:1.2. |
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No DNA |
Plasmid lost in Host E.coli |
Prepare fresh culture. |
|
Genomic DNA contamination |
Over-time incubation after adding buffer B1. |
Do not vortex or mix aggressively after adding buffer B1. Do not incubate more than 5 minutes after adding solution B1. |
|
RNA contamination |
RNase A not added to solution A1. |
Add RNase A to buffer A1. |
|
Plasmid DNA floats out of wells while running in agarose gel, DNA doesn’t freeze or smell of ethanol |
Ethanol traces not completely removed from column. |
Make sure that no ethanol residual remaining in the silicon membrane before elute the plasmid DNA. Re-centrifuge or vacuum again if necessary. |
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