Technique / Bioinformatics / Biological databases

Molecular biology and protein databases.

MyGENBANK with MySQL: Rolling your own relational sequence database protocol
A step-by-step diary written by a database novice describing how to use freely available tools and schemas from the Open Bioinformatics Foundation to create a MySQL-based relational database repository for biological sequence and annotation data. (Chris Dagdig ...

Getting more from your sequence new recommended review
This review contains various resources for sequence analysis. (Elizabeth A. Greene & Steven Henikoff, Nature Genetics Sequence Gazing) Content: Retrieving sequence information from the databases Searching for homologues to a sequence Explori ...

Molecular Biology Database Collection, 2005 update recommended review
This is an update of collection of molecular biology databases published on 2005 NAR issue. Michael Y. Galperin The Molecular Biology Database Collection: 2005 update Nucleic Acids Res., Jan 2005; 33: D5 - D24. Abstract: The Nucleic Acids Re ...

Index to 2-D PAGE databases and services new review
This page contains references to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services. ...

Phospho.ELM phosphorylation database recommended database
The Phospho.ELM database contains a collection of experimentally verified Serine, Threonine and Tyrosine sites in eukaryotic proteins. The entries, manually annotated and based on scientific literature, provide information about the phosphorylated proteins and ...

Patent search database: FreePatentOnline recommended database
FreePatentsOnline.com provides fast, easy-to-use access to millions of patents. It allows you to retrieve a PDF for any patent for free. ...

USPTO full-text and image patent search database recommended database
Official USPTO patent database for full-text search of biotechnology patents. (USPTO) ...

Protein phosphorylation database database
The Phosphorylation Site Database provides ready access to information from the primary scientific literature concerning proteins in prokaryotic organisms (i.e. members of the domains Archaea and Bacteria) that undergo covalent phosphorylation on the hydroxyl ...

Codon Usage Database database
Codon Usage Database is an extended WWW version of CUTG (Codon Usage Tabulated from GenBank). The frequency of codon use in each organism is made searchable through this site. (developed and mainteined by Yasukazu Nakamura at The First Laboratory for Plant Gen ...

• References
• Related Books
• Discussion
• Related news
• Job search

Table: Molecular biology databases 2005 collection
(Nucleic Acids Research, 2005, Vol. 33, Database issue D5-D24)
Michael Y. Galperin