Technique / Bioinformatics / Bioinformatics tools and software

JaMBW 1.1 workbench suite for molecular biologist

JaMBW 1.1 workbench suite for molecular biologist

JaMBW1.1 is the Java based Molecular Biologist's Workbench ideated, coordinated by Luca I.G.TOLDO.

Data Entry
Sequence conversion: SeqIO (James Knight)
Data Manipulation
Reverse / Complement / Inverse your sequence (Luca Toldo)
Shuffle [randomize its order] your sequence (Luca Toldo)
Translate from DNA to protein(Luca Toldo)

Features:

Data Analysis
Single Sequences
Windowed percentage composition (Luca Toldo)
Feature Viewer (Luca Toldo)
Look at all possible ORF (Luca Toldo)
Isoelectric point (Luca Toldo)
Antigenic Index (Luca Toldo and Ramu Chenna)
Oligo Calculator (Eugen Buehler)
Pairs of Sequences
dotplot comparisons (Luca Toldo)
Genetical and functional site mapping
find DNA and PROTEIN patterns, and binding / cutting sites (Luca Toldo)
Design (primers design, 3d viewer)
Threedimensional structure viewer ( Dirk Walther)
PCR Primer Design(Luca Toldo)
Phyisical mapping calculators (Andrey Grigoriev and Elizabeth Odekirk)
Buffer Calculator (Rob Beynon)