SNPview: SNPs, SSLPs, Alleles and Haplotypes

The viewer allows comparing the distribution of the SNPs and SSLPs, alleles and derived haplotype blocks in different regions of the mouse genome. Several different views are available for each chromosome: a chromatogram-style view of validated SNPs, major and minor alleles, haplotypes, and combinations of the above. The data for the selected strains is displayed at the full chromosomes (or user-defined intervals), along with the interrogated SNP loci, the reference tracks of the LocusLink gene loci, publicly available SSLP markers, and the subset of SSLP markers informative for the two selected strains. Additionally, Celera SNP density is displayed for chr.16 and three strains only. The choice of the Celera or Ensembl genomic coordinates is available.

Reference:
Wiltshire T, Pletcher MT, Batalov S, Barnes W, Tarantino LM, Cooke MP, Wu H, Smylie K, Santrosyan A, Copeland NG, Jenkins NA, Kalush F, Mural RJ, Glynne RJ, Kay SA, Adams MD, and Fletcher CF. Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse ( Proc Natl Acad Sci U S A. 2003 Mar 18; 100(6): 3380-5.)

Last update 24-Jan-2005, Rating n/a of 0 votes.